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MultiQC v1.34

New modules​

  • Methurator (#3447)
    • A Python package designed to estimate CpGs saturation for DNA methylation sequencing data.
  • riboWaltz (#3465)
    • Computes P-site offsets and performs quality control for ribosome profiling (Ribo-seq) data.

Feature updates and improvements​

  • Add uv as an installation method in docs and README (#3493)
  • Add Claude PostToolUse hook for code formatting (#3461)
  • Bump default AI models for Anthropic (#3430)
  • Remove HTML tags in generated module docs (#3509)
  • Enable code review workflow to post comments on PRs (#3506)
  • better header k/v spacing (#3471)
  • Hide AI summary sections when simple_output is enabled (#3500)
  • export_plots_timeout: Add docs and increase default to 60s (#3433)

Module updates​

  • Clarify RSeQC bam_stat proper pairs column title (#3526)
  • Fix mosdepth coverage in general stats if key is missing (#3432)
  • fastp: Add limits, update color scale of % PF/% Adapter (#3454)
  • fastp: Pick up version number for fasterp runs (#3392)
  • Freyja: Use safe alternative to eval() (#3531)

Fixes​

  • Fix heatmap axis labels not updating when toggling clustering (#3487)
  • Fix bug: Toggling highlighting for AI summary sample names didn't work (#3455)
  • fix table scroll styling with sticky headers (#3437)

Module fixes​

  • Fix sample name cleaning in CheckM and CheckM2 modules (#3464)
  • CrosscheckFingerprints: Fix bug due to overwriting row_number variable (#3458)
  • Porechop: Fix bug with "End Trimmed Percent" denominator (#3456)
  • Fix incorrect plot title in umicollapse module (#3446)
  • SNPsplit: Fix module datetime serialization error (#3444)

Infrastructure and packaging​

  • Switch from pre-commit to prek (#3467)

New Contributors​

Full Changelog: https://github.com/MultiQC/MultiQC/compare/v1.33...v1.34

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